nf-core/createtaxdb

Parallelised and automated construction of metagenomic classifier databases of different tools

databasedatabase-buildermetagenomic-profilingmetagenomicsprofilingtaxonomic-profiling

Version history

Initial release of nf-core/createtaxdb, created with the nf-core template.

Adds database building support for the following tools:

(Primarily) nucleotide based
- Bracken (added by @alxndrdiaz)
- Centrifuge (added by @jfy133)
- ganon (added by @jfy133)
- KMCP (added by @alxndrdiaz)
- KrakenUniq (added by @jfy133)
- Kraken2 (added by @alxndrdiaz)
- MALT (added by @jfy133 and @LilyAnderssonLee)
(Primarily) protein based
- DIAMOND (added by @jfy133)
- Kaiju (added by @jfy133)

Additional optimisation when running with very large number of genomes by @BioWilko.